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1

Comparison of the restricted mean survival time with the hazard ratio in superiority trials with a time-to-event end point

Huang, Bo, Kuan, Pei-Fen

Journal:

Pharmaceutical Statistics

Year:

2017

Language:

english

File:

PDF, 725 KB

english, 2017

2

Quantitative decision-making in randomized Phase II studies with a time-to-event endpoint

Huang, Bo, Talukder, Enayet, Han, Lixin, Kuan, Pei-Fen

Journal:

Journal of Biopharmaceutical Statistics

Year:

2018

Language:

english

File:

PDF, 1.44 MB

english, 2018

3

Outbreak of microsporidial keratoconjunctivitis associated with water contamination in swimming pools in Taiwan

Wang, Wen-Yi, Chu, Hsiao-Sang, Lin, Pei-Chun, Lee, Tai-Fen, Kuo, Kuan-Ting, Hsueh, Po-Ren, Hu, Fung-Rong, Wang, I-Jong

Journal:

American Journal of Ophthalmology

Year:

2018

Language:

english

File:

PDF, 7.24 MB

english, 2018

4

Epigenetic Biomarkers Of PTSD: Updates From The EWAS Working Group of The PTSD PGC

Ratanatharathorn, Andrew, Aiello, Allison, Boks, Marco, Hauser, Michael, Fen Kuan, Pei, Logue, Mark, Luft, Benjamin, Maihofer, Adam, Miller, Mark, Ressler, Kerry, Stein, Murray, Nievergelt, Caroline,

Journal:

European Neuropsychopharmacology

Year:

2019

Language:

english

File:

PDF, 49 KB

english, 2019

5

Negative binomial additive model for RNA-Seq data analysis

Ren, Xu, Kuan, Pei-Fen

Journal:

BMC Bioinformatics

Year:

2020

File:

PDF, 1.19 MB

2020

6

Reducing the consumption of personal protective equipment by setting up a multifunctional sampling station in the emergency department to screen for COVID-19 infection in Taiwan

Lin, Po-Ting, Ni, Ting-Yuan, Chen, Tren-Yi, Su, Chih-Pei, Sun, Hsiao-Fen, Chen, Mu-Kuan, Chou, Chu-Chung, Wang, Po-Yu, Lin, Yan-Ren

Journal:

Environmental Health and Preventive Medicine

Year:

2020

File:

PDF, 988 KB

2020

7

Integrating Prior Knowledge in Multiple Testing under Dependence with Applications to Detecting Differential DNA Methylation

Pei Fen Kuan, Derek Y. Chiang

Journal:

Year:

2012

Language:

english

File:

PDF, 728 KB

english, 2012

8

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data

Benedikt Zacher, Pei Fen Kuan, Achim Tresch

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.51 MB

english, 2010

9

Poor functional recovery may indicate restenosis in patients after coronary angioplasty

Ching Lan, Ssu-Yuan Chen, Shu-Fen Chiu, Chen-Jung Hsu, Jin-Shin Lai, Pei-Liang Kuan

Journal:

Archives of Physical Medicine and Rehabilitation

Year:

2003

Language:

english

File:

PDF, 95 KB

english, 2003

10

DNA-methylation profiling distinguishes malignant melanomas from benign nevi

Kathleen Conway, Sharon N. Edmiston, Zakaria S. Khondker, Pamela A. Groben, Xin Zhou, Haitao Chu, Pei Fen Kuan, Honglin Hao, Craig Carson, Marianne Berwick, David W. Olilla, Nancy E. Thomas

Journal:

Pigment Cell & Melanoma Research

Year:

2011

Language:

english

File:

PDF, 317 KB

english, 2011

11

RhoGDI2 antagonizes ovarian carcinoma growth, invasion and metastasis

Stevens, Ellen V., Banet, Natalie, Onesto, Cercina, Plachco, Ana, Alan, Jamie K., Nikolaishvili-Feinberg, Nana, Midkiff, Bentley R., Kuan, Pei Fen, Liu, Jinsong, Miller, C. Ryan, Vigil, Dominico, Grav

Journal:

Year:

2011

Language:

english

File:

PDF, 2.45 MB

english, 2011

12

A Statistical Framework for the Analysis of ChIP-Seq Data

Kuan, Pei Fen, Chung, Dongjun, Pan, Guangjin, Thomson, James A., Stewart, Ron, Keleş, Sündüz

Journal:

Journal of the American Statistical Association

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

13

Mutant DNMT3A clone evading chemotherapy and infiltrating central nervous system in a patient with molecularly good-risk acute myeloid leukemia

Chen, Yi-Yang, Huang, Cih-En, Chou, Hui-Ju, Tsai, Pei-Shan, Lu, Chang-Hsien, Chen, Miao-Fen, Lee, Kuan-Der, Chen, Ping-Tsung, Lung, Jrhau, Chen, Chih-Cheng

Journal:

Annals of Hematology

Year:

2014

Language:

english

File:

PDF, 108 KB

english, 2014

14

Obesity increases tumor aggressiveness in a genetically engineered mouse model of serous ovarian cancer

Makowski, Liza, Zhou, Chunxiao, Zhong, Yan, Kuan, Pei Fen, Fan, Cheng, Sampey, Brante P., Difurio, Megan, Bae-Jump, Victoria L.

Journal:

Gynecologic Oncology

Year:

2014

Language:

english

File:

PDF, 661 KB

english, 2014

15

Mo1575 Two Major Molecular Subclasses of Gastric Adenocarcinoma Differ in Epstein-Barr Virus Status and RNA Expression Profile

Morgan, Douglas R., Woodward, Kimberly, Meyers, Michael O., Dominguez, Ricardo, Martinez-Reina, Enrique, Kuan, Pei Fen, Gulley, Margaret L.

Journal:

Gastroenterology

Year:

2012

Language:

english

File:

PDF, 58 KB

english, 2012

16

A simple and robust method for partially matched samples using the p -values pooling approach

Kuan, Pei Fen, Huang, Bo

Journal:

Statistics in Medicine

Year:

2013

Language:

english

File:

PDF, 1.62 MB

english, 2013

17

Covariate adjusted differential variability analysis of DNA methylation with propensity score method

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2014

Language:

english

File:

PDF, 1.14 MB

english, 2014

18

A Non-Homogeneous Hidden-State Model on First Order Differences for Automatic Detection of Nucleosome Positions

Kuan, Pei Fen, Huebert, Dana, Gasch, Audrey, Keles, Sunduz

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2009

Language:

english

File:

PDF, 1.31 MB

english, 2009

19

DNA methylation profiles in primary cutaneous melanomas are associated with clinically significant pathologic features

Thomas, Nancy E., Slater, Nathaniel A., Edmiston, Sharon N., Zhou, Xin, Kuan, Pei-Fen, Groben, Pamela A., Carson, Craig C., Hao, Honglin, Parrish, Eloise, Moschos, Stergios J., Berwick, Marianne, Olli

Journal:

Pigment Cell & Melanoma Research

Year:

2014

Language:

english

File:

PDF, 7.62 MB

english, 2014

20

A systematic assessment of normalization approaches for the Infinium 450K methylation platform

Wu, Michael C, Joubert, Bonnie R, Kuan, Pei-fen, Håberg, Siri E, Nystad, Wenche, Peddada, Shyamal D, London, Stephanie J

Journal:

Year:

2014

Language:

english

File:

PDF, 2.00 MB

english, 2014

21

Interleukin-1α and -1β Promoter Polymorphisms in Taiwanese Patients with Dementia

Wang, Hsiu-Kuan, Hsu, Wen-Chuin, Fung, Hon-Chung, Lin, Jun-Cheng, Hsu, Hai-Pei, Wu, Yih-Ru, Hsu, Yuying, Hu, Fen-Ju, Lee-Chen, Guey-Jen, Chen, Chiung-Mei

Journal:

Dementia and Geriatric Cognitive Disorders

Year:

2007

Language:

english

File:

PDF, 164 KB

english, 2007

22

Contribution of Acinetobacter-derived cephalosporinase-30 to sulbactam resistance in Acinetobacter baumannii

Kuo, Shu-Chen, Lee, Yi-Tzu, Yang Lauderdale, Tsai-Ling, Huang, Wei-Cheng, Chuang, Ming-Fen, Chen, Chien-Pei, Su, Shey-Chiang, Lee, Kuan-Rong, Chen, Te-Li

Journal:

Frontiers in Microbiology

Year:

2015

Language:

english

File:

PDF, 1.42 MB

english, 2015

23

Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data

Chung, Dongjun, Kuan, Pei Fen, Li, Bo, Sanalkumar, Rajendran, Liang, Kun, Bresnick, Emery H., Dewey, Colin, Keleş, Sündüz, Wasserman, Wyeth W.

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 710 KB

english, 2011

24

Acute total left atrial thrombosis after mitral bioprosthesis replacement during ECMO support

Lin, Pei-Fen, Chiu, Kuan-Ming, Huang, Jih-Hsin, Chen, Jer-Shen, Chu, Shu-Hsun

Journal:

Heart Lung & Circulation

Year:

2015

Language:

english

File:

PDF, 627 KB

english, 2015

25

IsoDOT Detects Differential RNA-Isoform Expression/Usage With Respect to a Categorical or Continuous Covariate With High Sensitivity and Specificity

Sun, Wei, Liu, Yufeng, Crowley, James J., Chen, Ting-Huei, Zhou, Hua, Chu, Haitao, Huang, Shunping, Kuan, Pei-Fen, Li, Yuan, Miller, Darla, Shaw, Ginger, Wu, Yichao, Zhabotynsky, Vasyl, McMillan, Leon

Journal:

Journal of the American Statistical Association

Year:

2015

Language:

english

File:

PDF, 965 KB

english, 2015

26

Roles of nucleic acid substrates and cofactors in the vhs protein activity of pseudorabies virus

Liu, Ya-Fen, Tsai, Pei-Yun, Lin, Fong-Yuan, Lin, Kuan-Hsun, Chang, Tien-Jye, Lin, Hui-Wen, Chulakasian, Songkhla, Hsu, Wei-Li

Journal:

Veterinary Research

Year:

2015

Language:

english

File:

PDF, 2.41 MB

english, 2015

27

Time-to-event continual reassessment method incorporating treatment cycle information with application to an oncology phase I trial

Huang, Bo, Kuan, Pei Fen

Journal:

Biometrical Journal

Year:

2014

Language:

english

File:

PDF, 524 KB

english, 2014

28

Three Molecular Subtypes of Gastric Adenocarcinoma Have Distinct Histochemical Features Reflecting Epstein-Barr Virus Infection Status and Neuroendocrine Differentiation

Speck, Olga, Tang, Weihua, Morgan, Douglas R., Kuan, Pei Fen, Meyers, Michael O., Dominguez, Ricardo L., Martinez, Enrique, Gulley, Margaret L.

Journal:

Applied Immunohistochemistry & Molecular Morphology

Year:

2015

Language:

english

File:

PDF, 1.34 MB

english, 2015

29

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (4 – 8 January 2017)] Biocomputing 2017 - methylDMV: SIMULTANEOUS DETECTION OF DIFFERENTIAL DNA METHYLATION AND VARIABILITY WITH CONFOUNDER ADJUSTMENT

FEN KUAN, PEI, SONG, JUNYAN, HE, SHUYAO

Language:

english

File:

PDF, 863 KB

english

30

NIH Public Access

Duncan, James S, Whittle, Martin C, Nakamura, Kazuhiro, Abell, Amy N, Alicia, A, Zawistowski, Jon S, Johnson, Nancy L, Granger, Deborah A, Vincent, Nicole, Darr, David B, Usary, Jerry, Kuan, Pei-fen,

Year:

2013

Language:

english

File:

PDF, 7.58 MB

english, 2013

31

Significance of interstitial tumor-associated macrophages in the progression of lung adenocarcinoma

Sun, Bing‑Sheng, Pei, Bao‑Xiang, Zhang, Kang, Zhang, Lu‑Chang, Zhang, Guang‑Jing, Liu, Ji‑Kuan, Cui, Hong‑Wei, Pan, Fen, Zhang, Zhen‑Fa

Journal:

Oncology Letters

Year:

2016

Language:

english

File:

PDF, 1.52 MB

english, 2016

32

Breast tumor DNA methylation patterns associated with smoking in the Carolina Breast Cancer Study

Conway, Kathleen, Edmiston, Sharon N., Parrish, Eloise, Bryant, Christopher, Tse, Chiu-Kit, Swift-Scanlan, Theresa, McCullough, Lauren E., Kuan, Pei Fen

Journal:

Breast Cancer Research and Treatment

Year:

2017

Language:

english

File:

PDF, 855 KB

english, 2017

33

A systematic evaluation of nucleotide properties for CRISPR sgRNA design

Kuan, Pei Fen, Powers, Scott, He, Shuyao, Li, Kaiqiao, Zhao, Xiaoyu, Huang, Bo

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 687 KB

english, 2017

34

904. DNA Methylation Associated with PTSD and Depression in World Trade Center Responders: An Epigenome-Wide Study

Kuan, Pei Fen, Waszczuk, Monika, Kotov, Roman, Marsit, Carmen, Guffanti, Guia, Yang, Xiaohua, Koenen, Karestan, Bromet, Evelyn, Luft, Benjamin

Journal:

Biological Psychiatry

Year:

2017

Language:

english

File:

PDF, 42 KB

english, 2017

35

An aberrant NOTCH2-BCR signaling axis in B cells from patients with chronic GVHD

Poe, Jonathan C., Jia, Wei, Su, Hsuan, Anand, Sarah, Rose, Jeremy J., Tata, Prasanthi V., Suthers, Amy N., Jones, Corbin D., Kuan, Pei Fen, Vincent, Benjamin G., Serody, Jonathan S., Horwitz, Mitchell

Journal:

Year:

2017

Language:

english

File:

PDF, 4.91 MB

english, 2017

36

Bacterial diversity among four healthcare-associated institutes in Taiwan

Chen, Chang-Hua, Lin, Yaw-Ling, Chen, Kuan-Hsueh, Chen, Wen-Pei, Chen, Zhao-Feng, Kuo, Han-Yueh, Hung, Hsueh-Fen, Tang, Chuan Yi, Liou, Ming-Li

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.46 MB

english, 2017

37

Multivariate Boosting for Integrative Analysis of High-Dimensional Cancer Genomic Data

Xiong, Lie, Kuan, Pei-Fen, Tian, Jianan, Keles, Sunduz, Wang, Sijian

Journal:

Cancer Informatics

Year:

2014

Language:

english

File:

PDF, 968 KB

english, 2014

38

Gene expression associated with PTSD in World Trade Center responders: An RNA sequencing study

Kuan, Pei-Fen, Waszczuk, Monika A., Kotov, Roman, Clouston, Sean, Yang, Xiaohua, Singh, Prashant K., Glenn, Sean T., Cortes Gomez, Eduardo, Wang, Jianmin, Bromet, Evelyn, Luft, Benjamin J.

Journal:

Translational Psychiatry

Year:

2017

Language:

english

File:

PDF, 884 KB

english, 2017

39

Propensity Score Method for Partially Matched Omics Studies

Journal:

Cancer Informatics

Year:

2014

Language:

english

File:

PDF, 1.74 MB

english, 2014

40

Anti-inflammatory Activity of 8-Hydroxydaidzein in LPS-Stimulated BV2 Microglial Cells via Activation of Nrf2-Antioxidant and Attenuation of Akt/NF-κB-Inflammatory Signaling Pathways, as Well As Inhibition of COX-2 Activity

Wu, Pei-Shan, Ding, Hsiou-Yu, Yen, Jui-Hung, Chen, Shu-Fen, Lee, Kuan-Han, Wu, Ming-Jiuan

Journal:

Journal of Agricultural and Food Chemistry

Year:

2018

Language:

english

File:

PDF, 841 KB

english, 2018

41

Metabolomic Profiling Reveals Mitochondrial-Derived Lipid Biomarkers That Drive Obesity-Associated Inflammation

Sampey, Brante P., Freemerman, Alex J., Zhang, Jimmy, Kuan, Pei-Fen, Galanko, Joseph A., O'Connell, Thomas M., Ilkayeva, Olga R., Muehlbauer, Michael J., Stevens, Robert D., Newgard, Christopher B., B

Journal:

Year:

2012

Language:

english

File:

PDF, 834 KB

english, 2012

42

Application of Multiplexed Kinase Inhibitor Beads to Study Kinome Adaptations in Drug-Resistant Leukemia

Cooper, Matthew J., Cox, Nathan J., Zimmerman, Eric I., Dewar, Brian J., Duncan, James S., Whittle, Martin C., Nguyen, Thien A., Jones, Lauren S., Ghose Roy, Sreerupa, Smalley, David M., Kuan, Pei Fen

Journal:

Year:

2013

Language:

english

File:

PDF, 1.49 MB

english, 2013

43

Genomic Analyses of Cladophialophora bantiana, a Major Cause of Cerebral Phaeohyphomycosis Provides Insight into Its Lifestyle, Virulence and Adaption in Host

Kuan, Chee Sian, Cham, Chun Yoong, Singh, Gurmit, Yew, Su Mei, Tan, Yung-Chie, Chong, Pei-Sin, Toh, Yue Fen, Atiya, Nadia, Na, Shiang Ling, Lee, Kok Wei, Hoh, Chee-Choong, Yee, Wai-Yan, Ng, Kee Peng,

Journal:

Year:

2016

Language:

english

File:

PDF, 2.09 MB

english, 2016

44

methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing

Ren, Xu, Kuan, Pei Fen, Hancock, John

Journal:

Year:

2018

Language:

english

File:

PDF, 366 KB

english, 2018

45

Epigenetic meta-analysis across three civilian cohorts identifies NRG1 and HGS as blood-based biomarkers for post-traumatic stress disorder

Uddin, Monica, Ratanatharathorn, Andrew, Armstrong, Don, Kuan, Pei-Fen, Aiello, Allison E, Bromet, Evelyn J, Galea, Sandro, Koenen, Karestan C, Luft, Benjamin, Ressler, Kerry J, Wildman, Derek E, Niev

Journal:

Year:

2018

Language:

english

File:

PDF, 1.49 MB

english, 2018

46

Factors associated with cessation of exclusive breastfeeding at 1 and 2 months postpartum in Taiwan

Chang, Pei-Chi, Li, Sin-Fong, Yang, Hsin-Yi, Wang, Li-Chu, Weng, Cing-Ya, Chen, Kuan-Fen, Chen, Wei, Fan, Sheng-Yu

Journal:

International Breastfeeding Journal

Year:

2019

File:

PDF, 576 KB

2019

47

Multiple-kernel learning for genomic data mining and prediction

Wilson, Christopher M., Li, Kaiqiao, Yu, Xiaoqing, Kuan, Pei-Fen, Wang, Xuefeng

Journal:

BMC Bioinformatics

Year:

2019

File:

PDF, 977 KB

2019

48

Nerve‐tumor interaction enhances the aggressiveness of oral squamous cell carcinoma

Lee, Tsung‐Lun, Chiu, Po‐Hsien, Li, Wing‐Yin, Yang, Muh‐Hwa, Wei, Pei‐Yin, Chu, Pen‐Yuan, Wang, Yi‐Fen, Tai, Shyh‐Kuan

Journal:

Clinical Otolaryngology (Blackwell)

Year:

2019

Language:

english

File:

PDF, 14.61 MB

english, 2019

49

Nerve‐tumor interaction enhances the aggressiveness of oral squamous cell carcinoma

Lee, Tsung‐Lun, Chiu, Po‐Hsien, Li, Wing‐Yin, Yang, Muh‐Hwa, Wei, Pei‐Yin, Chu, Pen‐Yuan, Wang, Yi‐Fen, Tai, Shyh‐Kuan

Journal:

Clinical Otolaryngology (Blackwell)

Year:

2019

File:

PDF, 14.61 MB

2019

50

S13POLYGENIC PREDICTION OF PTSD TRAJECTORIES IN 9/11 RESPONDERS

Waszczuk, Monika, Kuan, Pei Fen, Docherty, Anna, Shabalin, Andrey, Bromet, Evelyn, Luft, Benjamin, Kotov, Roman

Journal:

European Neuropsychopharmacology

Year:

2019

Language:

english

File:

PDF, 52 KB

english, 2019